http://www.gly.uga.edu/railsback/FieldImages.htmlMolecularMicro

PAVED- A Software suite for  the analysis of epigenome-derived next generation sequencing data

washUlogo





MAIN

INDEX


ANALYTICAL PIPELINE

CONTACT

SYSTEM REQUIREMENTS

PAVED Package  

Example Data
System Requirements
If your machine does not have JAVA installed, please install the latest version from here

Windows Users: When java is installed on your machine, the path variable names must all be automatically set up. However for any reason they are not set up, then check the following.
  1. Windows users must have the JAVA directory at the location: C:\Program Files (x86)\Java or at C:\Program Files\Java. XP users should have it at C:\Program Files\Java. If you have several versions installed over time, each of those versions will exist as a directory within the Java directory. 
  2. click on start (or) windows logo at the bottom left of your windows screen and right click on computer (my computer). Click on advanced system settings and then on Environmental variables on the popup window. and check if JAVA_HOME is setup to the latest java home directory and path variable is setup as shown below:
    check1check2check3check4

  3. If these entries do not exist, please create these environmental variables. 
  4. Test if you can issue java commands from the command line by opening a command line and typing java -version
Linux Users: Install the version of java supported by your linux version. Set the JAVA_HOME environmental variable to the java home directory and append java bin directory path to the path variable. You should now be able to run java from command line. For most linux machines, java is already installed. If the version is older than 1.5x, update  your java to 1.5x or later.

MAC Users: Java updates are done automatically. Make sure you have java 1.5 or later. Perform software update as necessary